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Sofia Gomes

Post-Doctoral Researcher / Junior Group Leader

My main research interest is to understand how species interactions influence the structure and functioning of plant-microbial communities. I got my PhD from Leiden University in the Institute of Environmental Sciences. 


My previous work has focused on symbiosis between plants and mycorrhizal fungi, but is increasingly expanding to include other groups of organisms that are part of the soil foodweb in forest ecosystems. In my research I work across multiple scales from microcosm assays to field experiments.

I am the scientific coordinator of the SILVA NOVA project from Leiden University.

 

Publications

Gomes SIF, Fortuna MA, Bascompte J, Merckx VSFT. 2022. Mycoheterotrophic plants preferentially target arbuscular mycorrhizal fungi that are highly connected to autotrophic plants. New Phytologist (in press)

Gomes SIF, Kikuchi IABS, Lachenaud O, Perdomo J, Léotard G, Maas PJM, van de Kamer HM, Merckx VSFT. 2022. Unravelling the species diversity, phylogeny and biogeography of the mycoheterotrophic Voyrieae (Gentianaceae) and the description of a new species. Taxon (in press)

Thi LL, Mertens A, Vu DT, Vu TD, Minh PLA, Duc HN, Backer S, Swennen R, Vandelook F, Panis B, Amalfi M, Decock C, Gomes SIF, Merckx VST, Janssens S. 2022. Diversity of Fusarium associated banana wilt in northern Viet Nam. MycoKeys, 87: 53-76.

https://dx.doi.org/10.3897/mycokeys.87.72941

Wang D, Jacquemyn H, Gomes SIF, Vos RA, Merckx VSFT. 2021. Symbiont switching and trophic mode shifts in Orchidaceae. New Phytologist, 231: 791-800. 

https://doi.org/10.1111/nph.17414

Pecoraro L, Rasmussen HN, Gomes SIF, Wang X, Merckx VSFT, Cai L, Rasmussen FN. 2021. Fungal diversity driven by bark features affects phorophyte preference in epiphytic orchids from southern China. Scientific Reports, 11: 11287.

https://doi.org/10.1038/s41598-021-90877-1

Gomes SIF, Kielak AM, Hannula SE, Heinen R, Jongen R, Keesmaat I, Jonathan R, Bezemer TM. 2020. Microbiomes of a specialist caterpillar are consistent across different habitats but also resemble the local soil microbial communities. Animal Microbiome, 2: 37. 

https://doi.org/10.1186/s42523-020-00055-3


Soudzilovskaia NA, Vaessen S, Barcelo M, He J, Rahimlou S, Abarenkov K, Brundrett MC, Gomes SIF, Merckx VSFT, Tedersoo L. 2020. FungalRoot: global online database of plant mycorrhizal associations. New Phytologist, 227: 955-966. 

https://doi.org/10.1111/nph.16569


Gomes SIF, van Bodegom PM, van Agtmaal M, Soudzilovskaia NA, Bestman M, Duijm E, Speksnijder A, van Eekeren N. 2020. Microbiota in dung and milk differ between organic and conventional dairy farms. Frontiers in Microbiology, 11: 1746. 

https://doi.org/10.3389/fmicb.2020.01746


Martorelli I, Helwerda LS, Kerkvliet J, Gomes SIF, Nuytinck J, van der Werff CRA, Ramackers GJ, Gultyaev  AP, Merckx VSFT, Verbeek FJ. 2020. Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB). Journal of Integrative Bioinformatics, 17: 1. 

https://doi.org/10.1515/jib-2019-0046


Giesemann P, Eichenberg D, Stöckel M, Seifert LF, Gomes SIF, Merckx VSFT, Gebauer G. 2020. Dark septate endophytes and arbuscular mycorrhizal fungi (Paris-morphotype) affect the stable isotope composition of ‘classically’ non‐mycorrhizal plants. Functional Ecology, 34: 2453– 2466. 

https://doi.org/10.1111/1365-2435.13673


Gomes SIF, Merckx VSFT. 2020. Symbiosis: herbivory alters mycorrhizal nutrient exchange. Current Biology, 30: PR437-R439. 

https://doi.org/10.1016/j.cub.2020.04.016


Gomes SIF, Merckx VSFT, Kehl J, Gebauer G. 2020. Mycoheterotrophic plants living on arbuscular mycorrhizal fungi are generally enriched in 13C, 15N, and 2H isotopes. Journal of Ecology, 108: 1250-1261. 

https://doi.org/10.1111/1365-2745.13381


Gomes SIF, van Bodegom P, Merckx VSFT, Soudzilovskaia N. 2019. Environmental drivers for cheaters of arbuscular mycorrhizal symbiosis in tropical rainforests. New Phytologist, 223: 1575-1583. 

https://doi.org/10.1111/nph.15876


Gomes SIF, van Bodegom P, Merckx VSFT, Soudzilovskaia N. 2019. Global distribution of mycoheterotrophic plants. Global Ecology and Biogeography, 28: 1133-1145. 

https://doi.org/10.1111/geb.12920


Gomes SIF, Merckx VSFT, Hynson NA. 2018. Biological invasions increase the richness of arbuscular mycorrhizal fungi from a Hawaiian subtropical ecosystem. Biological Invasions, 20: 2421-2437. 

https://doi.org/10.1007/s10530-018-1710-7


Gomes SIF, Merckx VSFT, Saavedra S. 2017. Fungal-host diversity among mycoheterotrophic plants increases proportionally to their fungal-host overlap. Ecology and Evolution, 7: 3623–3630. 

https://doi.org/10.1002/ece3.2974


Merckx VSFT, Gomes SIF, Wapstra M, Hunt C, Steenbeeke G, Mennes CB, Walsh N, Smissen R, Hsieh T-H, Smets EF, Bidartondo MI. 2017. The biogeographical history of the interaction between mycoheterotrophic Thismia 

(Thismiaceae) plants and mycorrhizal Rhizophagus (Glomeraceae) fungi. Journal of Biogeography, 44: 1869-1879. 

https://doi.org/10.1111/jbi.12994


Gomes SIF, Aguirre-Gutiérrez J, Bidartondo M, Merckx VSFT. 2017. Arbuscular mycorrhizal interactions of mycoheterotrophic plants are more specialized than in surrounding green plants. New Phytologist, 213: 1418-1427. 

https://doi.org/10.1111/nph.14249


Carvalheiro LG, Biesmeijer JC, Benadi G, Fründ J, Stang M, I Bartomeus, Kaiser-Bunbury CN, Baude M, Gomes SIF, Merckx VSFT, Baldock KCR, Bennett ATD, Boada R, Bommarco R, Cartar R, Chacoff N, Dänhardt J, Dicks LV, Dormann CF, Ekroos J, Henson KSE, Holzschuh A, Junker RR, Lopezaraiza-Mikel M, Memmott J, Montero-Castaño A, Nelson IL, Petanidou T, Power EF, Rundlöf M, Smith HG, Stout JC, Temitope K, Tscharntke T, Tscheulin T, Vilà M, Kunin WE. 2014. The potential for indirect effects between co-flowering plants via shared pollinators depends on resource abundance, accessibility and relatedness. Ecology Letters, 17: 1389– 1399.

https://doi.org/10.1111/ele.12342